EEB 698 - Seminar on analysis of species composition data - Fall 2019
Recent updates:
- 16 Oct: Added sequential vs marginal test information to tests.r
Information:
- Syllabus: here
- ISU syllabus statements: here
- Background reading: Jari Oksanen's lecture notes with papers on selected topics
- Project Information: is given here
Assigned Readings
- Week 1: Short Oksanen notes, slides 1 - 9., Long form notes, old lectures #2 (Gradient analysis),
slides 18 (the first one in this batch) - 27
- Week 2/3: Short Oksanen notes, slides 50 - 64
- Week 4: Short Oksanen notes, slides 41 - 48
- Week 5: Short Oksanen notes, slides 65 - 80
optional, if you want to know more about PCA or CA: Short Oksanen notes, slides 12 - 40
- Week 6: Short Oksanen notes, slides 88 - 101
Week 7,8: Long Oksanen notes, Ordination II, reviews constrained ordination, permutations, and PERMANOVA
Week 9: Wang et al 2012, mvabund – an R package for model-based analysis of
multivariate abundance data. Methods in Ecology and Evolution 3:471-474
Handouts/Graphs:
Data sets and programs
Useful resources:
- Oksanen lecture notes
- Short version (2017 notes): go to his front page then click the "slides
for my lectures link".
- Long version (2016 notes): available here
- Mike Palmer's "ordination page": available here.
The R program and packages