Stat 415, Section 3 - Analysis of Species Composition Data - Fall 2011
Recent updates:
16 Mar: Posted
my solutions to HW 2
11 Dec: Posted
my solutions to HW 1
8 Dec: Added
HW 2
and associated data files,
lipo.csv
,
fish.csv
and
fishenv.csv
.
Information:
Syllabus:
here
Background reading: I looked at various texts to provide background reading for the material to be discussed. Eventually, I decided the best text was the set of lecture notes prepared by Jari Oksanen
available here.
and Jari's
vegan tutorial
.
Copies of Graphs and Photos
Assigned readings
Optional readings
Data sets and programs
Data sets
R programs
The R program and vegan package
Downloading R
(site at ISU for download and install)
Dave Robert's intro to R for Ecologists
Semi-comprehensive manual on R, probably more than you want (or need) to know for this course.
Documentation for the vegan package
This is a printed copy of all the help files in vegan.
My review of the 2004 version of the vegan package
, with code for two examples.
Ralf Schaefer's slides, lectures and R code
for using vegan and other packages for species composition data.
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