• Information:
  • Installing MARK on a Mac. Information from Jing, with link to Simon Bonner's Installation repository.
  • table of Mark models supported in RMark
  • intro to RMark document
  • RMarkdown file that produced Intro.pdf
  • intro to RMark, part 2 document. Covers fitting Mtb, Pledger and Huggins models
  • RMarkdown file that produced Intro-Part-2.pdf
  • intro to RMark, part 3 document. Covers age and other "automatic variables", model averaging when some parameters not estimated, and a cross-reference between model names used in lecture and RMark model names.
  • RMarkdown file that produced Intro-Part-3.pdf

• Data sets:
  • reidCH.txt Reid rabbit data set, for activities in Intro to RMark
  • reidCHs.txt Reid rabbit data set, with made up sex variable
  • skink.txt Skink data set, as capture history, with 2 made up numeric covariate, for Intro part 2 RMarkdown file
  • skinkSex.txt Skink data set, as capture history, with made up sex covariate

• Practice exercise #1, for 21 Sept:
  • Directions and questions for in class "lab" working through RMark
  • My R code for the skink exercise skink.r
• Practice exercise #2, for 12 Oct:
  • questions and demo.txt data set
  • and my answers